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Like most mothers, Kuzonza Barnes has a laundry list of things to keep track of each day. She shuttles Kimberly, 7, and Zenobia, 9, around Philadelphia to soccer practice or dance lessons, dresses them up for church, and helps with homework.

But in between errands and science projects, she has a nagging, unsettling feeling in the pit of her stomach. All three members of the Barnes family have been diagnosed with asthma.

The early years of motherhood for Barnes were marred with nearly two dozen trips to the emergency room, she estimated. Her youngest daughter's asthma has been the most difficult to control. Kimberly started wheezing before her first birthday. Weather changes, pets, and dust launched frightening attacks.

"She would not stop coughing, no matter how much medicine I gave her," said Barnes, adding that the child sometimes gasped for air so hard that her ribs and neck tendons would show.

Barnes has done her best to rid her house of asthma triggers, and she checks the weather every day with the earnestness of a meteorologist. She worries whether her girls' friends have pets or if there will be smoking in the house. Breakfast and dinner are accompanied by a fluticasone /salmeterol combination, cetirizine, and ranitidine for Kimberly, but none of the prescribed control medications seems to work.

"Parents always want to know, is this my fault, or is there anything I did or didn't do," said the Barnes family's pediatrician, Tyra Bryant-Stephens, MD, of the Children's Hospital of Philadelphia (CHOP). "We tell them it's a combination of genetics and environment."

What if Barnes could give her daughters medication tailored to their genetic makeup?

Researchers such as Hakon Hakonarson, MD, PhD, of the Center for Applied Genomics at CHOP, believe pharmacogenetics offers the most hope for asthma care. Genomic discoveries could guide the development of drugs for patients with particular genotypes and pave the way for genetic tests to predict patients' disease severity and responses to medications. Asthma genomics also could help policymakers implement air quality and safety standards based on the most susceptible patients.1 Genome-wide association studies were at an all-time high last year, making 2007 a milestone in the 20-year history of genome research. Over the last decade, 31,000 scientific articles about genomic discoveries have been published.

Can we get there?

Genomics is the study of all the genes in a person and how those genes interact with the environment. Genetics explores how traits are passed from one generation to another.

Unlike other diseases such as cystic fibrosis, asthma is not caused by one genetic mutation. Investigators already have uncovered more than 25 genes associated with asthma. The genes are linked with such triggers as diesel exhaust, cigarette smoke, day care, and dogs. The jigsaw puzzle of genetic mutations interacting with environmental irritants has some practitioners in the respiratory field wondering whether the quest for a genetic cause is surmountable.

"Genomics play a role, but it's like finding a needle in a haystack as far as all the different triggers that manifest themselves," said Paul Eberle, PhD, RRT, associate professor of respiratory therapy at Weber State University, Ogden, Utah. "The misconception is that pharmacogenetics can be a panacea to treat asthma in the future."

Dr. Hakonarson is undaunted.

His lab has set out on an ambitious expedition of collecting and analyzing the DNA of 100,000 children. Researchers at the $40 million facility will investigate the genetic origins of some of the most prevalent diseases including attention deficit hyperactivity disorder, autism, diabetes, obesity, and asthma. (Click here to view a slideshow of Dr. Hakonarson's lab.)

The journey

On a January afternoon, Dr. Hakonarson's eyes sweep across a computer screen in the lab's scanning room. Red, yellow, and green dots fill the display like a Byzantine mosaic. These colored dots represent the constellation of chemicals found in our DNA. Step back from the screen and a picture emerges with all the instructions for human life.

"My belief is you have multiple domains in asthma - hypersensitivity, remodeling, and inflammation - that all converge at one point," said Dr. Hakonarson, shrugging off remarks that asthma is too complex a disease with too many interacting factors. If you find this point, he said, you can give focused therapy for more than a third of asthma patients.

So far 20,000 children have provided saliva or blood samples for DNA analysis since the lab opened in 2006. They range in age from infants to 18.

Many of their parents have been enrolled and genotyped as well.

The adult studies further investigators' under-standing of the genetic association for common complex diseases and allow researchers to explore adult-onset diseases. The lab analyzes 800 to 1,000 samples a week from healthy and ill participants.

Funded by CHOP and grants from the National Institutes of Health, the center has not contracted financial support from pharmaceutical companies, Dr. Hakonarson said. Some companies have shown interest, particularly as asthma has emerged as a significant health problem in children.

Ethical considerations

Privacy and ethical questions abound in genome research. The Center for Applied Genomics has to tread carefully when collecting genetic data from children.

As the lab's head recruiter, Rosetta Chiavacci, RN, BSN, clinical research manager for the Center for Applied Genomics, gets all sorts of questions from parents considering enrolling their children in the study: Will insurance companies see the genetic information? How much blood will be drawn? Can I see my child's genetic profile?

But she was not prepared for one: Will you clone my child?

Still the No. 1 concern expressed by parents is how CHOP will protect the confidentiality and security of the genetic information, Chiavacci said.

The samples are encrypted four times in CHOP's computer system to ensure the genetic information remains anonymous. The genetic information is connected to patients' medical records so researchers can understand environmental and behavioral interactions. But the patients' names, birthdays, addresses, phone numbers, and other identifying information are removed from their patient histories. Just as researchers do not know whose DNA they are looking at, physicians and clinicians in the CHOP system do not have access to their patients' individual genetic informaion.

The center has genotyped more than 45,000 participants from CHOP and outside collaborators. This information is stored an hour's drive outside Philadelphia and spread among 250 hard drives. If a hard drive ever became lost or stolen, outside parties would recover only fragmented information, Dr. Hakonarson said.

The Center for Applied Genomics takes a hard line on not allowing participants to see their genetic information even if their DNA reveals "hits" for diseases such as autism or diabetes. It is too early to understand the implications of this information.

"If we release the information before we understand the full picture, we may be misinforming people," Dr. Hakonarson explained.

If participants become upset later in life that their parents gave away their DNA as children, the lab will destroy the information. Although they cannot delete existing data, researchers will not use the DNA for further studies. Two people so far have withdrawn.

Despite difficult ethical questions such as these, Dr. Hakonarson said many of the participants will see the lab's discoveries translated to better therapies or even cures for their diseases within their lifetime.

"Children today can benefit from such a therapy later in life," Dr. Hakonarson said.

That is the hope of most parents who agree to the study, Chiavacci said. The lab has eight full-time recruiters who meet with parents in the operating room or in physicians' offices. Because parents do not like to have their children's blood drawn unnecessarily, the recruiters target patients already getting bloodwork. The study has a 95 percent to 98 percent consent rate.

"At Children's, we see a lot of patients with chronic diseases," Chiavacci said. "Parents really look toward us for developing new treatments."

Genomics revolution

With so many studies under way, have we entered the genomics revolution?

Not so fast, said Muin Khoury, MD, PhD, director of the National Office of Public Health Genomics at the Centers for Disease Control and Prevention.

Scientists have not been able to replicate most genomic discoveries. Dr. Khoury prefers the word "evolution," in which case we probably are still in the Precambrian Era.

When the Human Genome Project began in 1990, scientists predicted that by 2010 genomics would be integrated fully into health care.

"Now we are in 2008, and I can tell you we won't get there in the next two years," Dr. Khoury said.

Genomics may not be integrated fully into health care until at least 2020, but more likely 2030, he estimated. In addition to training an entire health care workforce, researchers will have to spend years doing epidemiological studies to figure out how genomics will affect large-scale populations, he said.

"I don't think we're well prepared to deal with this kind of information," Dr. Khoury said.

While the road to personalized medicine might be decades away, several states are putting down the first cobblestones. Utah, Oregon, Michigan, and Minnesota have received CDC funding to develop statewide public health genomics programs.

The Utah Department of Health, for instance, created in 2001 a Chronic Disease Genomics department, which works with the asthma department to integrate genomics into asthma care.

Several factors make Utah the perfect state for laying the foundations for public health genomics. The Mormon Church encourages documenting genealogy records. Many families have stayed in Utah since it first was settled. And Utah's families are slightly larger on average, with 3.57 members compared with the 3.14 national average, according to U.S. census figures.

As part of its genomics campaign, the Utah Department of Health has held conferences addressing the latest genomic research and ethical questions.

How will genetic information be used by employers and insurers? What is the role of newborn screening? Are physicians obligated to share patients' genetic information with their families if they are at risk for developing a hereditary disease?

These big questions can be answered in small measures, according to program specialists. At one conference, they had audience members write down two things they could do in the next year to integrate the topic of genomics into other activities in Utah. One conference attendee, for instance, developed an incentive program for employees who collected a family health history.

"We wanted quick baby steps that will lead to the larger, more effective strategies in the future," said Libbey Chuy, MPH, environmental health program specialist for the asthma program.

They are working to integrate genomics into respiratory therapy and nursing curricula at local universities. Educational programs are in the works for senior citizens, school nurses, and health care practitioners to differentiate the hype from the facts.

"These promises that people are expecting to be fulfilled by genomics haven't happened yet," said Jenny Johnson, BS, health program specialist for the Chronic Disease Genomics Program of the Utah Department of Health. "Our role is to prepare the public health workforce, health care providers, policymakers, and the general public for when these promises of genomics are fulfilled eventually."

God's handwriting

Barnes did not realize how deeply asthma was rooted in her family history until she was diagnosed with asthma in 2006 at age 36. At first she was in denial.

Proof came when she was arm deep in dish water and suffered her first mild attack. But Barnes' second attack persuaded her to get serious about her asthma. Home alone, Barnes felt as though her airways completely closed shut. Unable to talk or dial 911, she sat on the floor and waited it out. "I just prayed," she said.

She has been praying a lot lately, hoping she and her daughters can make it through the day without an attack. The answer to her prayers might lie just a few miles away where CHOP researchers are working steadily to decipher God's handwriting.

References

1.University of Washington Center for Genomics and Public Health. Asthma Genomics: Implications for Public Health. 2004 April. Available from: http://www.cdc.gov/genomics/training/perspectives/asthma.htm.

2.Moffatt MF, Kabesch M, Liang L, Dixon AL, Strachan D, Heath S, et al. Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma. Nature. 2007 Jul 26;448(7152):470-3. Epub 2007 Jul 4.

Lauren Meade is assistant editor of ADVANCE. She can be reached at lmeade@merion.com.

Click Page 2 for Sidebar: Behind the Scenes of a Genetics Lab


Cracking the Code

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